Ribosomal protein L16



Ribosomal protein L16 (RPL16) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It binds to 23S RRNA and is located at the A site of the peptidyltransferase center.

RPL16
1wki – TtRPL16 – Thermus thermophilus - NMR

L16 in 50S subunit+RNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy – TtRPL16 in 50S subunit+RNA fragments

2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 2wrj, 2wrl, 2wro, 2wrr, 3hux, 3huz, 2wh2, 2wh4, 2wdi, 2wdj, 2wdl, 2wdn, 1vsp, 2v47, 2v49, 1vsa, 2hgj, 2hgq, 2hgu, 2j01, 2j03, 1yl3, 3mrz, 3ms1, 3i8f, 3i8i, 3i9c, 3i9e, 3f1f, 3f1h, 3d5b, 3d5d, 2b66, 2b9n, 2b9p, 1giy, 2y0v, 2y0x, 2y0z, 2y11, 2y13, 2y15, 2y17, 2y19, 3pyo, 3pyr, 3pyt, 3pyv, 2xtg, 2xux, 2xqe -  TtRPL16 in 50S subunit+5S RRNA+23S RRNA

3fin - TtRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM 2wwq – EcRPL16 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – Escherichia coli

3i1n, 3i1p, 3i1r, 3i1t, 3i20, 3i22, 3e1b, 3e1d, 3df2, 3df4, 2vhn, 2qov, 2qox, 2i2t, 2i2v, 1vs6, 1vs8, 2aw4, 2awb, 3oas, 3oat, 3ofd, 3og0, 3ofq, 1vt2, 1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny - EcRPL16 in 50S subunit+5S RRNA+23S RRNA

3fik, 2gya, 2gyc, 3bbx, 1p85, 1p86 - EcRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM 3kcr - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase

3bbo - RPL16 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach

2zjq, 2zjr, 1nkw - DrRPL16 in 50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans

3iy9 – RPL16 in 50S subunit – Leishmania taretolae

L16 in 50S subunit + antibiotics
3dll, 2zjp, 3cf5, 1xbp, 1sm1, 1nwx, 1nwy, 3pio, 3pip - DrRPL16 in 50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+antibiotic

2qam, 2qao, 2qba, 2qbc, 2qoz, 2qp1, 3ofc, 3ofz, 3ofr, 3orb - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic

3oh5, 3oh7, 3ohj, 3ohk, 3ohz, 3oi1, 3oi3, 3oi5 - TtRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic

L16 in large + small ribosomal subunit
1ml5 - EcRPL16 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM

L16 in 50S subunit + ribosome releasing factor (RRF)
2qbe, 2qbg, 2qbi, 2qbk, 2z4l, 2z4n - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+RRF

2rdo - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM

L16 in 50S subunit + various proteins
2vhm - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix

2j28 - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM

L16 in the 60S subunit
3o5h, 3o58 - yRPL16 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast

1s1i - yRPL16 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM 3jyw – RPL16 in 60S subunit – Cryo EM – Thermomyces lanuginosus

2ftc - RPL16 in 60S subunit+16S RRNA – Cryo EM – bovine

L16 in part of 50S subunit
1njm, 1njp – DrRPL16 + 23S RRNA + tRNA acceptor stEM mimic + general stress protein CTC + antibiotic